PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02786g02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 288aa    MW: 32397.2 Da    PI: 9.4169
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02786g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.33.9e-40401882130
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssas 71 
                               a kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k  + el++                +ss+ s
  Niben101Scf02786g02005.1  40 AYKKDRHSKINTARGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSPVNELVQGinkencstanigaisTSSTTS 124
                               78**************************************************************999999999998876555556 PP

                       TCP  72 ec......eaesssssasnsssg........kaaksaa.kskksqksaasalnlakesrakarararertrekm 130
                               ec      ++++          +        + +  ++ k +k  +  a+++ +akesr++arararert+ k+
  Niben101Scf02786g02005.1 125 ECevvsgiDESTT---------TndiqkqpnRGKVGEKkKANKLVR-RAAFNPVAKESRKQARARARERTKIKK 188
                               7755543222222.........122223333444444414444444.444899999**************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4342188IPR005333Transcription factor, TCP
PROSITE profilePS5136933.94742100IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.477170187IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAADSNKDTV ISSTNQDPEE VELQGSCKKK KGDNKRVAAA YKKDRHSKIN TARGPRDRRM  60
RLSLDVARKF FNLQDLLGFD KASKTVEWLL TKSKSPVNEL VQGINKENCS TANIGAISTS  120
STTSECEVVS GIDESTTTND IQKQPNRGKV GEKKKANKLV RRAAFNPVAK ESRKQARARA  180
RERTKIKKSF LNIGDKSMAA DDLKRLGCWS PFETGEESGI QGTNHQVEEH TTHHEEPLLG  240
TNENVDDCNL VVTGNWNPYT IFNYHHSTEI SHEQQFINWQ FSGKFWEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.10.0PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.10.0PREDICTED: transcription factor TCP12-like
TrEMBLF6KB941e-80F6KB94_SOLTU; BRANCHED1A isoform 1
STRINGPGSC0003DMT4000145721e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-28TCP family protein